Publications

Nicolás Gaggion, Noelia a Boccardo, Rodrigo Bonazzola, María Florencia Legascue, María Florencia Mammarella, Florencia Sol Rodriguez, Federico Emanuel Aballay, Florencia Belén Catulo, Andana Barrios, Luciano J Santoro, Franco Accavallo, Santiago Nahuel Villarreal, Leonardo I Pereyra-Bistrain, Moussa Benhamed, Martin Crespi, Martiniano María Ricardi, Ezequiel Petrillo, Thomas Blein, Federico Ariel, Enzo Ferrante (2026). ChronoRoot 2.0: An Open AI-Powered Platform for 2D Temporal Plant Phenotyping. GigaScience.

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Soledad Traubenik, Mauricio Alberto Reynoso, Francisco Sánchez-Rodríguez, Milagros Yacullo, Aurelie Christ, Maureen Hummel, Thomas Blein, Martín Crespi, Julia Bailey-Serres, Flavio Antonio Blanco, María Eugenia Zanetti (2025). Subunit 3 of the SUPERKILLER complex mediates microRNA172-directed cleavage of Nodule Number Control 1 in Medicago truncatula. Plant physiology.

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Patrícia Montessoro, Joaquin Felipe Roca Paixão, Carinne N M Costa, Laura Ducatti, Letícia Perdigão Grangeiro, Vivian Ruivo, Adriana Flores Fusaro, Helkin F Ballesteros, Vanessa Iurif, Luiz Mors Cabral, Jelmir Craveiro De Andrade, Leticia Tessaro, Wallace De Paula Bernado, Fernanda Silva Coelho, Bruna Gino De Araújo-Lopes, Janice De Almeida Engler, Jérémie Bazin, Eliemar Campostrini, Carlos Adam Conte-Junior, Adriana Silva Hemerly (2025). The ABAP1 interacting protein 10 (AIP10) exerts a dual role in the cell cycle and primary metabolism pathways in Arabidopsis thaliana. The Plant journal : for cell and molecular biology.

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Pablo Mammi, Thomas Blein (2025). From non-coding to chromatin regulators: VIVIpary and the rise of lncRNAs in plant biology. Molecular plant.

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Andana Barrios, Nicolás Gaggion, Natanael Mansilla, Thomas Blein, Céline Sorin, Leandro Lucero, Enzo Ferrante, Martin Crespi, Federico Ariel (2025). The transcription factor NF-YA10 determines the area explored by Arabidopsis thaliana roots and directly regulates LAZY genes. The Plant journal.

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Taline Elmayan, Thomas Blein, Emilie Elvira-Matelot, Ivan Le Masson, Aurelie Christ, Nathalie Bouteiller, Martin D Crespi, Hervé Vaucheret (2025). Arabidopsis SGS3 is recruited to chromatin by CHR11 to select RNA that initiate siRNA production. Nature communications.

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Jérémie Bazin, Martin Crespi (2024). When splicing meets transgene DNA methylation to uncover elite alleles for plant yield. The New phytologist.

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Luca Argirò, Carole Laffont, Corentin Moreau, Carol Moreau, Yangyang Su, Marjorie Pervent, Hugues Parrinello, Thomas Blein, Wouter Kohlen, Marc Lepetit, Florian Frugier (2024). The Compact Root Architecture 2 systemic pathway is required for the repression of cytokinins and miR399 accumulation in Medicago truncatula N-limited plants. Journal of experimental botany.

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Salomé Soulé, Kaiwei Huang, Karine Mulet, Joffrey Mejias, Jérémie Bazin, Nhat My Truong, Junior Lusu Kika, Stéphanie Jaubert, Pierre Abad, Jianlong Zhao, Bruno Favery, Michaël Quentin (2024). The root-knot nematode effector MiEFF12 targets the host ER quality control system to suppress immune responses and allow parasitism. Molecular plant pathology.

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Soledad Traubenik, Céline Charon, Thomas Blein (2024). From environmental responses to adaptation: the roles of plant lncRNAs. Plant physiology.

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Anna Siodmak, Federico Martinez-Seidel, Naganand Rayapuram, Jérémie Bazin, Hanna Alhoraibi, Dione Gentry-Torfer, Naheed Tabassum, Arsheed H Sheikh, José Kenyi González Kise, Ikram Blilou, Martin Crespi, Joachim Kopka, Heribert Hirt (2023). Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic acids research.

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Li Liu, Michel Heidecker, Thomas Depuydt, Nicolas Manosalva Perez, Martin Crespi, Thomas Blein, Klaas Vandepoele (2023). Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots. Plant physiology.

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Thomas Roulé, María Florencia Legascue, Andana Barrios, Nicolás Gaggion, Martin Crespi, Federico Ariel, Thomas Blein (2023). The long intergenic noncoding RNA ARES modulates root architecture in Arabidopsis. IUBMB life.

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Wil Prall, Arsheed H Sheikh, Jérémie Bazin, Jean Bigeard, Marilia Almeida-Trapp, Martin Crespi, Heribert Hirt, Brian D Gregory (2023). Pathogen-induced m6A dynamics affect plant immunity. The Plant cell.

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Jérémie Bazin, Emilie Elvira-Matelot, Thomas Blein, Vincent Jauvion, Nathalie Bouteiller, Jun Cao, Martin D Crespi, Hervé Vaucheret (2023). Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting posttranscriptional transgene silencing. The Plant cell.

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Andana Barrios, Nicolas Gaggion, Natanael Mansilla, Leandro Lucero, Thomas Blein, Céline Sorin, Enzo Ferrante, Martin Crespi, Federico Ariel (2023). The transcription factor NF-YA10 determines the area explored by Arabidopsis thaliana roots through direct regulation of LAZY and TAC genes. bioRxiv.

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Ying Huang, Jing An, Sanchari Sircar, Clara Bergis, Chloé Dias Lopes, Xiaoning He, Barbara Da Costa, Feng-Quan Tan, Jérémie Bazin, Javier Antunez-Sanchez, Maria Florencia Mammarella, Ravi-Sureshbhai Devani, Rim Brik-Chaouche, Abdelhafid Bendahmane, Florian Frugier, Chongjing Xia, Christophe Rothan, Aline v Probst, Zouine Mohamed, Catherine Bergounioux, Marianne Delarue, Yijing Zhang, Shaojian Zheng, Martin Crespi, Sotirios Fragkostefanakis, Magdy M Mahfouz, Federico Ariel, Jose Gutierrez-Marcos, Cécile Raynaud, David Latrasse, Moussa Benhamed (2023). HSFA1a modulates plant heat stress responses and alters the 3D chromatin organization of enhancer-promoter interactions. Nature communications.

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Camille Fonouni-Farde, Aurelie Christ, Thomas Blein, María Florencia Legascue, Lucía Ferrero, Michaël Moison, Leandro Lucero, Juan Sebastián Ramírez-Prado, David Latrasse, Daniel Gonzalez, Moussa Benhamed, Leandro Quadrana, Martin Crespi, Federico Ariel (2022). The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants. Genome biology.

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Joffrey Mejias, Yongpan Chen, Jérémie Bazin, Nhat My Truong, Karine Mulet, Yara Noureddine, Stéphanie Jaubert-Possamai, Sarah Ranty-Roby, Salomé Soulé, Pierre Abad, Martin D Crespi, Bruno Favery, Michaël Quentin (2022). Silencing the conserved small nuclear ribonucleoprotein SmD1 target gene alters susceptibility to root-knot nematodes in plants. Plant physiology.

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Haroon Butt, Jérémie Bazin, Kasavajhala v S K Prasad, Nourelislam Awad, Martin Crespi, Anireddy S N Reddy, Magdy M Mahfouz (2022). The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses. Cells.

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Thomas Roulé, Aurelie Christ, Nosheen Hussain, Ying Huang, Caroline Hartmann, Moussa Benhamed, Jose Gutierrez-Marcos, Federico Ariel, Martin Crespi, Thomas Blein (2022). The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA. Molecular plant.

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Thomas Roulé, Martin Crespi, Thomas Blein (2022). Regulatory long non-coding RNAs in root growth and development. Biochemical Society transactions.

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Marine Guilcher, Arnaud Liehrmann, Chloé Seyman, Thomas Blein, Guillem Rigaill, Benoit Castandet, Etienne Delannoy (2021). Full Length Transcriptome Highlights the Coordination of Plastid Transcript Processing. International journal of molecular sciences.

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Nicolás Gaggion, Federico Ariel, Vladimir Daric, Éric Lambert, Simon Legendre, Thomas Roulé, Alejandra Camoirano, Diego H Milone, Martin Crespi, Thomas Blein, Enzo Ferrante (2021). ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture. GigaScience.

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Michaël Moison, Javier Martínez Pacheco, Leandro Lucero, Camille Fonouni-Farde, Johan Rodríguez-Melo, Natanael Mansilla, Aurelie Christ, Jérémie Bazin, Moussa Benhamed, Fernando Ibañez, Martin Crespi, José M Estevez, Federico Ariel (2021). The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold. Molecular plant.

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Haroon Butt, Jérémie Bazin, Sahar Alshareef, Ayman Eid, Moussa Benhamed, Anireddy S N Reddy, Martin Crespi, Magdy M Mahfouz (2021). Overlapping roles of spliceosomal components SF3B1 and PHF5A in rice splicing regulation. Communications biology.

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Constanza Chialva, Thomas Blein, Martin Crespi, Diego Lijavetzky (2021). Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation. Scientific reports.

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